#!/bin/bash
#-----------------------------------------------------------------
# Template script for serial jobs to run on SGE cluster.
# Modify it for your case and submit to SGE with
# command "qsub batch_run.sh".

# You may want to modify the parameters for
# "-N" (job queue name)

#
#------- Attention: #$ is a special SGE symbol, not a comment ------

# Give a name to your job (for example, run-on-mphase):
#$ -N my_run 
#
# Specify the kind of shell script you use, for example, bash
#$ -S /bin/bash
#
# Standard output and error files:
#$ -o stdo.output
#$ -e stderr.output
#

# Start this script from the current working directory:
#$ -cwd

# Specify the current working directory:
CDIR=`pwd`

# Specify the name of your executable, for example, "mycode.x"
myjob=mycode.x

# Specify a local temporary directory on the running node:
TMPD=/tmp/$LOGNAME/$JOB_ID

this_node=`/bin/uname -n`
echo "TMPD is $this_node:$TMPD"
mkdir -p $TMPD

# Copy you compiled executable into $TMPD directory
# along with the input files and run it from there:
cp $myjob $TMPD
cd $TMPD
$TMPD/$myjob

# Copy the results back into CDIR:
cp $TMPD/results.dat $CDIR

# Clean TMPD
cd /tmp
rm -rf $TMPD